A0A348WJ80 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Amino acid permease
Main knot	4₁ (73%)
Global pLDDT	84.06
Species	Roseovarius nubinhibens
UniProt	A0A348WJ80
Structure Prediction Model	AlphaFold v4: A0A348WJ80
PDB structures	-
Model length	321
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					86.8	34-296	263	1-33, 297-321	33	25

Model Sequence

MTLANENVGAAPGDGTLHRAIRWPQAFWLASGVPALVLFSIGGIAATIGNPSWVIWMLSVSFGFLQAFIYAEIAGLFPSKSGGASVYGAAAWVRYSKLLAPLSVWCNWLAWTPVLAIGGGLAAGYILNVFFDPESAIRSWQITLVNLDGLKEGLSLRIDATFMLGAMILLVVFGVQHGGVLRAAKFQTIMGLAVVIPLLIVGIVPLLTGDVLAENLTPLKPLAFDADGNVTQGQWDIPGWTLFLGGLFIAAWSAYAFETAICYTSEFKDPAYDTPRAILFAGLLCILVYTLVPLSFQGVLGVEGMLQDGIVDGSAVAGAMA

Comments

ESM1

Categories voted by users:

Information

Protein name	Amino acid permease
Main knot	4₁ (67%)
Global pLDDT	82.31
Species	Roseovarius nubinhibens
UniProt	A0A348WJ80
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	321
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					78.4	34-296	263	1-33, 297-321	33	25

Model Sequence

Comments

Domain	Bacteria
Family	Roseobacteraceae
Species (Full Name)	Roseovarius nubinhibens
Gene	DCS45_22360
PFAM codes	PF13520
InterPro codes	IPR002293
PDB structures (whole Protein)	-

A0A348WJ80F1

AF4

Model Sequence

ESM1

Model Sequence