| Protein name |
Inner membrane protein yrbG
|
| Main knot |
31 (74%)
|
| Global pLDDT |
86.3
|
| Species |
Aeromonas shigelloides
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A379H5T4
|
| PDB structures |
-
|
| Model length |
385
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
82.3 | 22-258 | 237 | 1-21, 259-385 | 21 | 127 |
|
Model Sequence |
MDYLLLAIGLVLLVVGADGLVKGAARLAASIGIPSLVIGLTVVAFGTSAPELAVSIRSALAGQSEMAIANVVGSNIFNVLFILGLAAIITPLAISRQLIRQDVPLMVLASMLVFYMIRDGVLSRLDAGILVVLLLAYTVFLFVQGKRTEATERASGANNSVDPSTSGAAPSDAASTEQDDEVDALIRGTHPTWQNLLWIIGGLACLVTGANLLVNSAVNIARAFAVSEAVIGLTIVAVGTSLPEVMTSIVASIKGQRDIAVGNVVGSNIFNLLAVLGVSGVLSSNGLAGNEQLVQQDFPVMLAVALLCVPLFFTDAILSRIEGALFFILYLAYTLFLIGGALHAPWLASVQGIIVYALIPLTVVVVIGSLVKDRYDKRQLSKVSE
|
| Protein name |
Inner membrane protein yrbG
|
| Main knot |
31 (72%)
|
| Global pLDDT |
93.66
|
| Species |
Aeromonas shigelloides
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
385
|
| ESM generation time |
2023-06-25: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
94.8 | 24-274 | 251 | 1-23, 275-385 | 23 | 111 |
|
Model Sequence |
MDYLLLAIGLVLLVVGADGLVKGAARLAASIGIPSLVIGLTVVAFGTSAPELAVSIRSALAGQSEMAIANVVGSNIFNVLFILGLAAIITPLAISRQLIRQDVPLMVLASMLVFYMIRDGVLSRLDAGILVVLLLAYTVFLFVQGKRTEATERASGANNSVDPSTSGAAPSDAASTEQDDEVDALIRGTHPTWQNLLWIIGGLACLVTGANLLVNSAVNIARAFAVSEAVIGLTIVAVGTSLPEVMTSIVASIKGQRDIAVGNVVGSNIFNLLAVLGVSGVLSSNGLAGNEQLVQQDFPVMLAVALLCVPLFFTDAILSRIEGALFFILYLAYTLFLIGGALHAPWLASVQGIIVYALIPLTVVVVIGSLVKDRYDKRQLSKVSE
|
A0A379H5T4
IPR004481