A0A3B0WDM5 | AlphaKnot 2.0

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Information

Protein name	DUF3127 domain-containing protein
Main knot	5₁ (86%)
Global pLDDT	83.39
Species	hydrothermal vent
UniProt	A0A3B0WDM5
Structure Prediction Model	AlphaFold v6: A0A3B0WDM5
PDB structures	-
Structure in AlphaLasso	A0A3B0WDM5: LS_2++C
Model length	126
AlphaFold deposition date	2026-06-01
AlphaKnot deposition date	2026-07-09

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.15	60-115	56	1-59, 116-126	59	11		Knot
					97.01	71-104	34	1-70, 105-126	70	22		Knot

MNPQQIKIIIAIVVTLIFTIMFKPIVAMDVQPESDSNVTSVASSTPECRKKGINLHGKVQFVDSFPDLTIQYVSSFPEIKVEFVSSFPVNCGQWQKVDSFPDFKVQVVSSFADLKVKKVSSFPGMN

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Categories voted by users:

Information

Protein name	DUF3127 domain-containing protein
Main knot	5₁ (89%)
Global pLDDT	84.01
Species	hydrothermal vent
UniProt	A0A3B0WDM5
Structure Prediction Model	AlphaFold v4: A0A3B0WDM5
PDB structures	-
Structure in AlphaLasso	A0A3B0WDM5: LS_2++C
Model length	126
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.2	59-116	58	1-58, 117-126	58	10

MNPQQIKIIIAIVVTLIFTIMFKPIVAMDVQPESDSNVTSVASSTPECRKKGINLHGKVQFVDSFPDLTIQYVSSFPEIKVEFVSSFPVNCGQWQKVDSFPDFKVQVVSSFADLKVKKVSSFPGMN

Comments

Categories voted by users:

Information

Protein name	DUF3127 domain-containing protein
Main knot	7₂ (90%)
Global pLDDT	48.39
Species	hydrothermal vent
UniProt	A0A3B0WDM5
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	A0A3B0WDM5: LS_2++C
Model length	126
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					44.1	54-116	63	1-53, 117-126	53	10

MNPQQIKIIIAIVVTLIFTIMFKPIVAMDVQPESDSNVTSVASSTPECRKKGINLHGKVQFVDSFPDLTIQYVSSFPEIKVEFVSSFPVNCGQWQKVDSFPDFKVQVVSSFADLKVKKVSSFPGMN

Comments

Domain	Unclassified
Family	ecological metagenomes
Species (Full Name)	hydrothermal vent metagenome
Gene	MNBD_GAMMA01-685
PDB structures (whole Protein)	-

A0A3B0WDM5F1