A0A3B3DJD9 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (83%)
Global pLDDT	83.68
Species	Marine medaka
UniProt	A0A3B3DJD9
Structure Prediction Model	AlphaFold v4: A0A3B3DJD9
PDB structures	-
Model length	355
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					88.7	9-221	213	1-8, 222-355	8	134

Model Sequence

MSGSAGEWCLMESDPGVFTELIKGFGCKGAQVEEIWSMEPENFENLKPVHGLIFLFKWQPGEEPAGSIVQDSRLDHIFFAKQVINNACATQAIISVLLNCSHPDIVLGDTLSEFREFSQSFDAAMKGLALSNSEVIRQVHNSFARQQMFEFDAKSSAKDEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMSIVSDRKMIYEKKIAELQAQLTEDEPMDTDQTSSFLSSIQSEIAKYQLLIEEENQKLKRYKIENIRRKHNYLPFIMELLKTLAEYQQLMPLVEKEVYDKKNKNKKIHSALLSALDEHSTCAFFMWKKKRYIIMI

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (76%)
Global pLDDT	83.28
Species	Marine medaka
UniProt	A0A3B3DJD9
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	355
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					87.3	10-221	212	1-9, 222-355	9	134

Model Sequence

Comments

Domain	Eukaryota
Family	Adrianichthyidae
Species (Full Name)	Oryzias melastigma (Marine medaka)
PFAM codes	PF01088, PF18031
InterPro codes	IPR001578, IPR017390, IPR033837, IPR036959, IPR038765, IPR041507
PDB structures (whole Protein)	-

A0A3B3DJD9F1

AF4

Model Sequence

ESM1

Model Sequence