A0A3B5QGL2 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (79%)
Global pLDDT	85.65
Species	Southern platyfish
UniProt	A0A3B5QGL2
Structure Prediction Model	AlphaFold v4: A0A3B5QGL2
PDB structures	-
Model length	338
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					88.9	9-221	213	1-8, 222-338	8	117

Model Sequence

MSGSAGEWCLMESDPGVFTELIKGFGCKGAQVEEIWSMEPENFENLKPVHGLIFLFKWQPGEEPAGSIVQDSRLDHIFFAKQVINNACATQAIISVLLNCSHPDMLLGDTLTEFREFSQSFDGAMKGLALSNSEVIRQVHNSFARQQMFEFDAKSSAKDEDAFHFVSYVPVNGRLYELDGLREGPIDLGTCNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMVYEKKIAELQAQLTEEEPMDTDQNNTFLSSIQSEIAKCQLLIEEENQKLKRYKIENIRRKHNYLPFIMELLKTLAEYQQLIPLVEKVTILSLLQFSTTLLTLGSQSLRI

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (76%)
Global pLDDT	87.25
Species	Southern platyfish
UniProt	A0A3B5QGL2
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	338
ESM generation time	2023-06-26: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					87.5	10-221	212	1-9, 222-338	9	117

Model Sequence

Comments

Domain	Eukaryota
Family	Poeciliidae
Species (Full Name)	Xiphophorus maculatus (Southern platyfish) (Platypoecilus maculatus)
PFAM codes	PF01088, PF18031
InterPro codes	IPR001578, IPR017390, IPR033837, IPR036959, IPR038765, IPR041507
PDB structures (whole Protein)	-

A0A3B5QGL2F1

AF4

Model Sequence

ESM1

Model Sequence