| Protein name |
YD repeat-containing protein
|
| Main knot |
41 (52%)
|
| Global pLDDT |
85.99
|
| Species |
Spirochaeta sp
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A3C0T121
|
| PDB structures |
-
|
| Model length |
301
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
88.0 | 14-301 | 288 | 1-13, | 13 | 0 |
|
Model Sequence |
MKNVFTAFLIISVLIISSCVTPTTEADSDSRNLSNVEKAETAETAEKAETENKGKTAVTEVVSIPYLLKDTNYFSDGYIESYKVYSYNDDMSIAREDLFDSFDELIESTVYEPMSDGALRRSLFDARGTLQSWRKLVTADGLSVRIESYNSEDELQTVSENTYDAEGNLTVWKILNGSGVVLSETRYIYESGENTKIEIYDTSMMLREYFINEFEDGLIVKNSHYDENDKIKTVVEYAYEDGVLVSGKYLRANGSTSRTMTYSNDEKGSPLKTETFDGNGKLKDWNEKEYEYVSKEITVWK
|
| Protein name |
YD repeat-containing protein
|
| Main knot |
01 (75%)
|
| Species |
Spirochaeta sp
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
301
|
| ESM generation time |
2023-06-22: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
Model Sequence |
MKNVFTAFLIISVLIISSCVTPTTEADSDSRNLSNVEKAETAETAEKAETENKGKTAVTEVVSIPYLLKDTNYFSDGYIESYKVYSYNDDMSIAREDLFDSFDELIESTVYEPMSDGALRRSLFDARGTLQSWRKLVTADGLSVRIESYNSEDELQTVSENTYDAEGNLTVWKILNGSGVVLSETRYIYESGENTKIEIYDTSMMLREYFINEFEDGLIVKNSHYDENDKIKTVVEYAYEDGVLVSGKYLRANGSTSRTMTYSNDEKGSPLKTETFDGNGKLKDWNEKEYEYVSKEITVWK
|
| Domain |
Bacteria
|
| Family |
Spirochaetaceae
|
| Species (Full Name) |
Spirochaeta sp
|
| Gene |
DCO79_11480
|
| PDB structures (whole Protein) |
-
|
A0A3C0T121