A0A3M5NVS0 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Transporter
Main knot	4₁ (69%)
Global pLDDT	82.28
Species	Pseudomonas syringae pv
UniProt	A0A3M5NVS0
Structure Prediction Model	AlphaFold v4: A0A3M5NVS0
PDB structures	-
Model length	322
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					90.8	56-306	251	1-55, 307-322	55	16

Model Sequence

MHQCRLRESVCLSTKVESRTMRDLFWLGVSIMSTDKVSVHGSWASRWVFILAATGSAVGLGSIWKFPYMVGAYGGGAFVLVFLACIALIGIPVMIAETLIGRRSRLSPANALKTLAVEAGHSARWSWGAFAGMITALLILSFYSVVGGWSLDYIIDMGRGDFQGVTADQVGAYFGAMIADPWRLILWHTVFMLLSAVVIGKGVEAGLERSLRIMMPMLFLLMLALLGYSLTTGHFMEGVHFMFDFNPDKVLDGLLPAMGHAFFSLSVGVGSIMVYGAYMTKGASISTTVVGIALLDTFVSLLAGLALFPIVFAAGLSPSVLF

Comments

ESM1

Categories voted by users:

Information

Protein name	Transporter
Main knot	4₁ (67%)
Global pLDDT	88.1
Species	Pseudomonas syringae pv
UniProt	A0A3M5NVS0
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	322
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					61.3	56-306	251	1-55, 307-322	55	16

Model Sequence

Comments

Domain	Bacteria
Family	Pseudomonadaceae
Species (Full Name)	Pseudomonas syringae pv. theae
Gene	ALP44_04585
PFAM codes	PF00209
InterPro codes	IPR000175, IPR037272
PDB structures (whole Protein)	-

A0A3M5NVS0F1

AF4

Model Sequence

ESM1

Model Sequence