A0A3S2PFR9 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	S-adenosylmethionine synthase (EC 2.5.1.6)
Main knot	3₁ (79%)
Global pLDDT	96.35
Species	Javanese ricefish
UniProt	A0A3S2PFR9
Structure Prediction Model	AlphaFold v4: A0A3S2PFR9
PDB structures	-
Model length	397
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					98.5	29-294	266	1-28, 295-397	28	103

Model Sequence

MEMNGPVDGSGERAPDEGAFLFTSESVGEGHPDKICDQISDAVLDAHLSKDPDAKVACETVCKTGMVLLCGEITSRACVDYQKVVRDVIKHIGYDSSSKGLDYKTCNVLVALEEQSPDIAQGVHVDRMESEIGAGDQGLMFGYATDETDECMPLTIVLAHKLNAKMAELRRNGTVPWLRPDSKTQVTVHYSQESGAVIPERIHTVVISVQHDDHVSLEEQRRVLMEKVIRAVIPAKYLDQNTVYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVNARLCRRVLVQVAYAIGVAHPLSISLFTFGSSQKSEKELLQIVHRNFDLRPGVIVRDLDLKRPIYQKTACYGHFGRKEFPWEVPKNLEF

Comments

ESM1

Categories voted by users:

Information

Protein name	S-adenosylmethionine synthase (EC 2.5.1.6)
Main knot	3₁ (81%)
Global pLDDT	85.92
Species	Javanese ricefish
UniProt	A0A3S2PFR9
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	397
ESM generation time	2023-06-27: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					76.6	31-288	258	1-30, 289-397	30	109

Model Sequence

Comments

Domain	Eukaryota
Family	Adrianichthyidae
Species (Full Name)	Oryzias javanicus (Javanese ricefish) (Aplocheilus javanicus)
Gene	OJAV_G00194010
PFAM codes	PF00438, PF02772, PF02773
InterPro codes	IPR002133, IPR022628, IPR022629, IPR022630, IPR022631, IPR022636
PDB structures (whole Protein)	-

A0A3S2PFR9F1

AF4

Model Sequence

ESM1

Model Sequence