A0A3S4GFN3 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Pantothenate permease
Main knot	4₁ (72%)
Global pLDDT	84.44
Species	Serratia marinorubra
UniProt	A0A3S4GFN3
Structure Prediction Model	AlphaFold v4: A0A3S4GFN3
PDB structures	-
Model length	313
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					90.1	52-277	226	1-51, 278-313	51	36

Model Sequence

MEHNNFLIWFLLYAFVMMAVGWYVTRHQKTGEDFILGGRKLPMLLTLGSTVGTMVGTGSSIGAVSFGYTNGWAGMLYGIGGATGILLTAWLFGPVRKLRFMTMSEEICYYTGGSRIVKNLVALLIFLASIGWLGAHILGGGLYLAWAADIDITVAKIIIAVGFIFYVGIGGYKAVSWIDTLQSIVLFVGFIVLAALSVSYVGGWDTLVANTDPQAFTLFGIGKLGLWPALSLAIVIGIGVLATPSYRQRIYSAASTRSIRQSFVITGLLYMGFSFLPAIIGMATHVMNPELENPALPSCSPPMPCRPRWPWWC

Comments

ESM1

Categories voted by users:

Information

Protein name	Pantothenate permease
Main knot	4₁ (58%)
Global pLDDT	89.32
Species	Serratia marinorubra
UniProt	A0A3S4GFN3
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	313
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					91.1	51-277	227	1-50, 278-313	50	36

Model Sequence

Comments

Domain	Bacteria
Family	Yersiniaceae
Species (Full Name)	Serratia rubidaea (Serratia marinorubra)
Gene	panF_1 NCTC9419_00405
PFAM codes	PF00474
InterPro codes	IPR001734, IPR038377
PDB structures (whole Protein)	-

A0A3S4GFN3F1

AF4

Model Sequence

ESM1

Model Sequence