A0A3Z3I178 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
Main knot	3₁ (84%)
Global pLDDT	94.57
Species	Salmonella muenchen
UniProt	A0A3Z3I178
Structure Prediction Model	AlphaFold v4: A0A3Z3I178
PDB structures	-
Model length	255
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.4	86-131	46	1-85, 132-255	85	124

Model Sequence

MFIGIVSLFPEMFRAITDYGVTGRAVKNGLLNIQSWSPRDFTHDRHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGVDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGHEASAIEDSFADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA

Comments

ESM1

Categories voted by users:

Information

Protein name	tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
Main knot	3₁ (83%)
Global pLDDT	89.74
Species	Salmonella muenchen
UniProt	A0A3Z3I178
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	255
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.2	86-131	46	1-85, 132-255	85	124

Model Sequence

Comments

Domain	Bacteria
Family	Enterobacteriaceae
Species (Full Name)	Salmonella muenchen
Gene	trmD BCP69_22285 BCP87_07240 BI268_21625 CEY82_22215 DNZ40_18785 DSR33_19265 DY550_21345 E0Y79_21425 EJP10_20710 EZ693_20310 G3328_004607 G4B39_002956 G4P04_004420 GNB45_004496 ZU22_21140
PFAM codes	PF01746
InterPro codes	IPR002649, IPR016009, IPR023148, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A3Z3I178F1

AF4

Model Sequence

ESM1

Model Sequence