A0A401P9B0 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (88%)
Global pLDDT	83.49
Species	Cloudy catshark
UniProt	A0A401P9B0
Structure Prediction Model	AlphaFold v4: A0A401P9B0
PDB structures	-
Model length	363
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.2	43-255	213	1-42, 256-363	42	108

Model Sequence

MRRRPGRGAGSAGKGAWSSRTPRLCQSEAHATAEMAGSAGEWCLMESDPGVFTELIKGFGCKGVQVEEIWSLEPEHFDKLKPVHGLIFLFKWQPGEEPAGSIVQDSRLEKIFFAKQVINNACATQAIISVLLNCVHPDIELGETLGEFKEFSQSFDAAMKGLALSNSEVIRQVHNGFARQQMFEFDAKTAGKEEDAFHFVSYFPVHGRLYELDGLREGPIDLGTCNQDDWVSAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYERKIRDLQRQLSEEEPMDTDQNSSIINSIQSEVAKYQMLIEEENQKLKRYKIENVRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKVQEAK

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (90%)
Global pLDDT	85.34
Species	Cloudy catshark
UniProt	A0A401P9B0
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	363
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					59.2	44-255	212	1-43, 256-363	43	108

Model Sequence

Comments

Domain	Eukaryota
Family	Scyliorhinidae
Species (Full Name)	Scyliorhinus torazame (Cloudy catshark)
Gene	scyTo_0012465
PFAM codes	PF01088, PF18031
InterPro codes	IPR001578, IPR017390, IPR033837, IPR036959, IPR038765, IPR041507
PDB structures (whole Protein)	-

A0A401P9B0F1

AF4

Model Sequence

ESM1

Model Sequence