| Protein name |
Type I site-specific deoxyribonuclease
|
| Main knot |
81 (72%)
|
| Global pLDDT |
91.36
|
| Species |
Neobacillus notoginsengisoli
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A417YQ24
|
| PDB structures |
-
|
| Model length |
289
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
93.2 | 36-264 | 229 | 1-35, 265-289 | 35 | 25 |
|
Model Sequence |
MAKGKKTKLSVAAKLMETFIEEGKYPEMKQTEGKIKKLTTNVKEILKDSDSKRHEFKEAGLVGRFTAKKVYKTDYIALNEYLYDVGLLLQVAEIDNKAIDSNELYLEMIQDFKLTDSFYIKPNFNKLGNALNKIPQNFAMADQWDLSVAIKELAILKSKEKHLNSDYEILKRKFMKLPEIQHLMKQAKREPIHHKYGSLSVIANQPKYDIPAICDYIGEWMLIEYGKPNSRLLEQFILNGTISKKDIEQFRTVVDIRLEFAVMTLEDEKLVFEMLDKKNRMAAANRMGA
|
| Protein name |
Type I site-specific deoxyribonuclease
|
| Main knot |
81 (73%)
|
| Global pLDDT |
88.53
|
| Species |
Neobacillus notoginsengisoli
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
289
|
| ESM generation time |
2023-06-23: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
84.4 | 38-260 | 223 | 1-37, 261-289 | 37 | 29 |
|
Model Sequence |
MAKGKKTKLSVAAKLMETFIEEGKYPEMKQTEGKIKKLTTNVKEILKDSDSKRHEFKEAGLVGRFTAKKVYKTDYIALNEYLYDVGLLLQVAEIDNKAIDSNELYLEMIQDFKLTDSFYIKPNFNKLGNALNKIPQNFAMADQWDLSVAIKELAILKSKEKHLNSDYEILKRKFMKLPEIQHLMKQAKREPIHHKYGSLSVIANQPKYDIPAICDYIGEWMLIEYGKPNSRLLEQFILNGTISKKDIEQFRTVVDIRLEFAVMTLEDEKLVFEMLDKKNRMAAANRMGA
|
| Domain |
Bacteria
|
| Family |
Bacillaceae
|
| Species (Full Name) |
Neobacillus notoginsengisoli
|
| Gene |
D1B31_17820
|
| PDB structures (whole Protein) |
-
|
A0A417YQ24