A0A419J6N7 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
Main knot	3₁ (84%)
Global pLDDT	96.35
Species	Candidatus Bathyarchaeota
UniProt	A0A419J6N7
Structure Prediction Model	AlphaFold v4: A0A419J6N7
PDB structures	-
Model length	240
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.7	151-199	49	1-150, 200-240	150	41

Model Sequence

MLTLIMAESALEVIPKELRSHPSVLSHSRRRGKPPSRLILDRSYHHAAMKRLDRGWKRGRPDIVHISLLEALGSPLNREGLLRVFVHTFDGHVITIASETRLPRNYMRFIGLMEQLFELGRVPPSGKPLLKIERKSLKMLLEDVKPSYVLALSSAGKPTTLPKAVLRLTNSERPAVLVGGFPAGDFEEETVELADEVLSIDPETLEAWTVTSRVIYEYERAIGLPERRLKRQLEEKPSKV

Comments

ESM1

Categories voted by users:

Information

Protein name	Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
Main knot	3₁ (88%)
Global pLDDT	95.26
Species	Candidatus Bathyarchaeota
UniProt	A0A419J6N7
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	240
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.1	151-199	49	1-150, 200-240	150	41

Model Sequence

Comments

Domain	Archaea
Family	unclassified Candidatus Bathyarchaeota
Species (Full Name)	Candidatus Bathyarchaeota archaeon
Gene	nep1 CW680_01020 CW711_03825
PFAM codes	PF03587
InterPro codes	IPR005304, IPR023503, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A419J6N7F1

AF4

Model Sequence

ESM1

Model Sequence