A0A437DFA7 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (75%)
Global pLDDT	86.96
Species	Javanese ricefish
UniProt	A0A437DFA7
Structure Prediction Model	AlphaFold v4: A0A437DFA7
PDB structures	-
Model length	329
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					88.2	9-221	213	1-8, 222-329	8	108

Model Sequence

MSGSAGEWCLMESDPGVFTELIKGFGCKGAQVEEIWSMEPENFENLKPVHGLIFLFKWQPGEEPAGSIVQDSRLDHIFFAKQVINNACATQAIISVLLNCSHPDIVLGDTLSEFREFSQSFDAAMKGLALSNSEVIRQVHNSFARQQMFEFDAKSSAKDEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMSIVSDRKMIYEKKIAELQAQLTEDEPMDTDQTSSFLSSIQSEIAKYQLLIEEENQKLKRYKIENIRRKHNYLPFIMELLKTLAEYQQLMPLVEKAKEKQSAKKAQEAK

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (75%)
Global pLDDT	88.34
Species	Javanese ricefish
UniProt	A0A437DFA7
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	329
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					87.3	10-221	212	1-9, 222-329	9	108

Model Sequence

Comments

Domain	Eukaryota
Family	Adrianichthyidae
Species (Full Name)	Oryzias javanicus (Javanese ricefish) (Aplocheilus javanicus)
Gene	OJAV_G00033410
PFAM codes	PF01088, PF18031
InterPro codes	IPR001578, IPR017390, IPR033837, IPR036959, IPR038765, IPR041507
PDB structures (whole Protein)	-

A0A437DFA7F1

AF4

Model Sequence

ESM1

Model Sequence