| Protein name |
Integral membrane protein
|
| Main knot |
52 (46%)
|
| Global pLDDT |
87.21
|
| Species |
Gordonia paraffinivorans
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A449GSL1
|
| PDB structures |
-
|
| Model length |
329
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
86.3 | 26-261 | 236 | 1-25, 262-329 | 25 | 68 |
|
Model Sequence |
MPVTVTERSLDFAFPELHADARLRINVMRTLRVPDDDTTYGLPPGMGTFELRTAADTWSRAHGWTPTDVVLPMWQAEAAWFSFHCPSDYPFLVRISVGGVNAVTGEDFAEEIDFFGEDYFEVPEQPWLDGFRVDATTVRQFVAMPLGRGYTAAEQLTGDDDGSIRIEVTPLRADVWEERVAARHDIATPGMPAGAVFDGLLCEGVPDPDGATGMGLGAGGTITQSIATPVEPRGNWDTTATSRSTLRIVNSADWEALTGTRPHHEPPTIAEYVEHGYPWFEWYDDSLARQGDSKFSSIKTVKEIGAEKGESPLPDNTSFTPPQPHVVGS
|
| Protein name |
Integral membrane protein
|
| Main knot |
31 (66%)
|
| Global pLDDT |
70.26
|
| Species |
Gordonia paraffinivorans
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
329
|
| ESM generation time |
2023-06-23: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
90.9 | 93-228 | 136 | 1-92, 229-329 | 92 | 101 |
|
Model Sequence |
MPVTVTERSLDFAFPELHADARLRINVMRTLRVPDDDTTYGLPPGMGTFELRTAADTWSRAHGWTPTDVVLPMWQAEAAWFSFHCPSDYPFLVRISVGGVNAVTGEDFAEEIDFFGEDYFEVPEQPWLDGFRVDATTVRQFVAMPLGRGYTAAEQLTGDDDGSIRIEVTPLRADVWEERVAARHDIATPGMPAGAVFDGLLCEGVPDPDGATGMGLGAGGTITQSIATPVEPRGNWDTTATSRSTLRIVNSADWEALTGTRPHHEPPTIAEYVEHGYPWFEWYDDSLARQGDSKFSSIKTVKEIGAEKGESPLPDNTSFTPPQPHVVGS
|
| Domain |
Bacteria
|
| Family |
Gordoniaceae
|
| Species (Full Name) |
Gordonia paraffinivorans
|
| Gene |
NCTC8139_02225
|
| PDB structures (whole Protein) |
-
|
A0A449GSL1