| Protein name |
GAF domain-containing protein
|
| Main knot |
41 (81%)
|
| Global pLDDT |
81.17
|
| Species |
Agrobacterium tumefaciens
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A4D7YVD0
|
| PDB structures |
-
|
| Model length |
850
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
92.3 | 24-291 | 268 | 1-23, 292-850 | 23 | 559 |
|
Model Sequence |
MAPSDYHVDLTNCDREPIHIPGYIQPHGCLIACDNAMRMVLRHSENCRELLGVEGDINGRTAEEVLGKKLVHDLRNALTVTGRTTRPAMLPAMEMSDGRSFDISLHRYKSTTIIEFEPSRSETQPLGTARKMVDRIREADSVESLISRTTRLIKATLGYDRVMIYRFEEDGAGKVVSEAKQPELESFLGQYFPASDIPQQARALYLKNTLRIISDASGARVSVLPALDASGEPLDMSFAHLRSVSPIHCEYLRNMGVAASMSISVIVDGALWGLIACHHYSPRVLTMPVRIAAEMFGEFFSMHLQVLKQKRRLDTVHHAHAALDRFLRLAAHHANIEELLIDSFQDFADLMPCDGVGLWVGNNWHGHGATPPHDAIPRLARFVASTSEGKVWATHALSQAIPEAEIYASTAAGMLAIPLSQVKNDYLLFFRKEIVQNLNWAGNPEKSYETGPMGDRLTPRKSFAIWKETVRLQAQPWSEADREIAEAARIALVEVAFHHSELMAGERERAEVRQRMLNEELNHRVKNVLAIIKSLVGNPSQEGKTLQEYVTALKGRIQALSFAHDQIIRGEGGGALRDLLDAELSPHRSPETVLKLTGPQVTLDSRAFSVMALVLHELATNAAKYGALSQNGGQLHVRWTINENRDCEIEWREILPTKLPPPSRAGFGTALISRSIPYDLGGRSTLRYLPDGLEAEILLPSRHVSSATAVADTQTEDETAPQPRRYNREEPLKVLLVEDQMLIAMDVENMLEDNGIKAIETATSSAMAIEKLKTYVPDVAILDINLGSDTSIPVARELHRRGVPFLFATGYADGSMVPDEFGTVPVIRKPYDEDALMAGIGLLVGDAERV
|
| Domain |
Bacteria
|
| Family |
Rhizobiaceae
|
| Species (Full Name) |
Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter)
|
| Gene |
CFBP7129_09185
|
| PFAM codes |
PF00072, PF00360, PF01590, PF07536, PF08446
|
| InterPro codes |
 IPR001294, IPR001789, IPR003018, IPR009219, IPR011006, IPR011102, IPR013515, IPR013654, IPR016132, IPR029016, IPR035965, IPR036890, IPR043150
|
| PDB structures (whole Protein) |
-
|
A0A4D7YVD0