A0A4W3JTM0 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (89%)
Global pLDDT	83.74
Species	Ghost shark
UniProt	A0A4W3JTM0
Structure Prediction Model	AlphaFold v4: A0A4W3JTM0
PDB structures	-
Model length	371
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.7	51-263	213	1-50, 264-371	50	108

Model Sequence

MGEGGMWGAGRVPRGLPGRACGPPNSAPAQCGSPARVPSVAEMAGNAGEWCLMESDPGVFTELIKGFGCKGVQVEEIWSLEPEHFDKLKPVHGLIFLFKWQPGEEPAGSIVQDSRLEKIFFAKQVINNACATQAIISVLLNCNHSDIELGETLGEFKEFSQSFDAAMKGLALSNSEVIRQVHNGFARQQMFEFDAKTAGKEEDAFHFVSYFPVNGRLYEHDGLREGPIDLGTCNQDDWVSAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMVYEKKITELQRQLTEEEPMDTDQSSSLINSIQSEVAKYQMLIEEENQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQEAK

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (77%)
Global pLDDT	84.55
Species	Ghost shark
UniProt	A0A4W3JTM0
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	371
ESM generation time	2023-06-26: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					59.8	52-263	212	1-51, 264-371	51	108

Model Sequence

Comments

Domain	Eukaryota
Family	Callorhinchidae
Species (Full Name)	Callorhinchus milii (Ghost shark)
PFAM codes	PF01088, PF18031
InterPro codes	IPR001578, IPR017390, IPR033837, IPR036959, IPR038765, IPR041507
PDB structures (whole Protein)	-

A0A4W3JTM0F1

AF4

Model Sequence

ESM1

Model Sequence