A0A516NVC5 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	RNA methyltransferase
Main knot	3₁ (92%)
Global pLDDT	87.51
Species	Nocardia otitidiscaviarum
UniProt	A0A516NVC5
Structure Prediction Model	AlphaFold v4: A0A516NVC5
PDB structures	-
Model length	228
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					85.2	151-194	44	1-150, 195-228	150	34

Model Sequence

MFGVNHAPTDESLPGPTEWGEHPHGVGPWRAEFGTEPPADPRLDPELLTHGDRRNVVDAYRYWTREAIVADIDRRRHPFHVAIENFGHDANIGTVVRTANAFAAAAVHIVGRKRWNRRGAMVTDRYQHIEHHADTAALLVFAAASGLTVVAVDNVPGAVPLETVRLPRACLLLFGQEGPGVTADAKAGARLTVSIAQFGSTRSINAGVAAGIAMHAWVREHADLSAAW

Comments

ESM1

Categories voted by users:

Information

Protein name	RNA methyltransferase
Main knot	3₁ (87%)
Global pLDDT	84.9
Species	Nocardia otitidiscaviarum
UniProt	A0A516NVC5
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	228
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					38.8	151-194	44	1-150, 195-228	150	34

Model Sequence

Comments

Domain	Bacteria
Family	Nocardiaceae
Species (Full Name)	Nocardia otitidiscaviarum
Gene	FOH10_33235
PFAM codes	PF00588
InterPro codes	IPR001537, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A516NVC5F1

AF4

Model Sequence

ESM1

Model Sequence