A0A533WUR5 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
Main knot	3₁ (87%)
Global pLDDT	92.54
Species	Thaumarchaeota archaeon
UniProt	A0A533WUR5
Structure Prediction Model	AlphaFold v4: A0A533WUR5
PDB structures	-
Model length	238
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					94.4	151-198	48	1-150, 199-238	150	40

Model Sequence

MTLIIAEAALETVPREIASHAAVRNHAHSLGRHPSETLLDRSYHHAAMSRLKDNSKRGRPDIVHFALMEALSTPIFMKCKLRVYVHTIDDKLITIAENLRIPKSYFRFEGLAMGLFRDKMVKSDQGAVLMEISDGTFEDLLNAVKPERVIGLSTTGVQSNAEKVVTENLVDDCALVVGGFPRGHFSESTTRLLNLTYSISDIPFEAHVVIARILYECEKLLEKGIHHEGDEKRRQVRA

Comments

ESM1

Categories voted by users:

Information

Protein name	Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
Main knot	3₁ (85%)
Global pLDDT	92.72
Species	Thaumarchaeota archaeon
UniProt	A0A533WUR5
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	238
ESM generation time	2023-06-26: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.3	151-198	48	1-150, 199-238	150	40

Model Sequence

Comments

Domain	Archaea
Family	unclassified Thaumarchaeota
Species (Full Name)	Thaumarchaeota archaeon
Gene	nep1 E6K85_07240
PFAM codes	PF03587
InterPro codes	IPR005304, IPR023503, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A533WUR5F1

AF4

Model Sequence

ESM1

Model Sequence