A0A542SXY5 | AlphaKnot 2.0

AF4

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Information

Protein name	Integral membrane protein
Main knot	5₂ (55%)
Global pLDDT	82.56
Species	Streptomyces puniciscabiei
UniProt	A0A542SXY5
Structure Prediction Model	AlphaFold v4: A0A542SXY5
PDB structures	-
Model length	351
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					84.6	21-262	242	1-20, 263-351	20	89

Model Sequence

MAGSGVRIDGNTLRLPGGVAIRFIRTLRLPETGTHPLPPGLGEFPVRRVADYPDTVPAEWRARGGVMLPVYLREAMWLSFSGTLEPAALQVAAGKVCAVSGRPWSSRLAREPQNYVVLPRQPWLDGINSGKGTVRQFVAVPLGLGATVEGQVTGEEVWGGVQLQSFPLREPLLSEWRRREREREEARRRALAAGPTGGYGAPMPMAASAPGAMPPPPAPGGAPRAAAMGLGVGGSMRQEVYRDDRPLTDWSEEPAGRVFVHLVTPPEWRRITGEAPPPSPVDRAAYTRAGLPWYDYYDADAQDLAPTHTLEAVKPVGEWLGDDLDPWQAPSAGQVTPLKDAPGKPVEDGDW

Comments

ESM1

Categories voted by users:

Information

Protein name	Integral membrane protein
Main knot	5₂ (72%)
Global pLDDT	73.89
Species	Streptomyces puniciscabiei
UniProt	A0A542SXY5
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	351
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					87.2	23-279	257	1-22, 280-351	22	72

Model Sequence

Comments

Domain	Bacteria
Family	Streptomycetaceae
Species (Full Name)	Streptomyces puniciscabiei
Gene	FB563_8191
PDB structures (whole Protein)	-

A0A542SXY5F1

AF4

Model Sequence

ESM1

Model Sequence