A0A5D2DXH8 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Aa_trans domain-containing protein
Main knot	4₁ (85%)
Global pLDDT	77.85
Species	Darwin's cotton
UniProt	A0A5D2DXH8
Structure Prediction Model	AlphaFold v4: A0A5D2DXH8
PDB structures	-
Model length	395
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					81.4	47-247	201	1-46, 248-395	46	148

Model Sequence

MWVYECHKMDFTKAGKLESQNEVQQPQQPTKGTSFFRTCFNGLNALSGVGILSIPYALAQGGWLSLLLLFLVAVLCWYTGLLLRRCMDTHPLIKTYPDIVEFLILEGDNLDKLFPNTAFKVAGLKIRGKQAFVMLTSLIVLPTTWLKSLALLAYVSAGGVLASFILVICIFWVGAVDKVGFHENDSVLNWKGMPIAISMFAFCYCGHAVFPTLCSSMKDRIKFSKVLLVCFITSTINYGSMAVMGYLMFGEHLKSQVTLNLPIKKMSTKIAIYTTLINPLTKYAIITAPITTAIEETSLFRNSRSLSILIRTALVISTVIVALTIPFFGYVMAFIGSFLSVTASMLLPCLCYLKLNKAARKMGLELIIIVAILVAGLFIGVVGTFTSIKQIVNHL

Comments

ESM1

Categories voted by users:

Information

Protein name	Aa_trans domain-containing protein
Main knot	4₁ (59%)
Global pLDDT	85.78
Species	Darwin's cotton
UniProt	A0A5D2DXH8
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	395
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					73.8	51-321	271	1-50, 322-395	50	74

Model Sequence

Comments

Domain	Eukaryota
Family	Malvaceae
Species (Full Name)	Gossypium darwinii (Darwin's cotton) (Gossypium barbadense var. darwinii)
Gene	ES288_A13G084800v1
PFAM codes	PF01490
InterPro codes	IPR013057
PDB structures (whole Protein)	-

A0A5D2DXH8F1

AF4

Model Sequence

ESM1

Model Sequence