A0A5D2MIN1 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Aa_trans domain-containing protein
Main knot	4₁ (78%)
Global pLDDT	77.57
Species	Hawaiian cotton
UniProt	A0A5D2MIN1
Structure Prediction Model	AlphaFold v4: A0A5D2MIN1
PDB structures	-
Model length	395
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					79.5	47-245	199	1-46, 246-395	46	150

Model Sequence

MWVYECHKMDFTKAGKLESQNEVQQPQQPTKGTSFFRTCFNGLNALSGVGILSIPYALAQGGWLSLLLLFLVAVLCWYTGLLLRRCMDTHPLIKTYPDIVEFLILEGDNLDKLFPNTAFKVAGLKIRGKQAFVMLTSLIVLPTTWLKSLALLAYVSAGGVLASFILVICIFWVGAVDKVGFHENDSVLNLKGMPIAISMFAFCYCGHAVFPTLCSSMKDRSKFSKVLLVCFITSTINYGSMAVMGYLMFGEHLKSQVTLNLPIKKMSTKIAIYTTLINPLTKYAIITAPITTAIEETSLFRNSRSLSILIRTALVISTVIVALTIPFFGYVMAFIGSFLSVTASMLLPCLCYLKLNKAARKMGLELIIIVAILMAGLFIGVVGTFTSIKQIVNHL

Comments

ESM1

Categories voted by users:

Information

Protein name	Aa_trans domain-containing protein
Main knot	4₁ (59%)
Global pLDDT	85.84
Species	Hawaiian cotton
UniProt	A0A5D2MIN1
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	395
ESM generation time	2023-06-24: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					74.1	51-321	271	1-50, 322-395	50	74

Model Sequence

Comments

Domain	Eukaryota
Family	Malvaceae
Species (Full Name)	Gossypium tomentosum (Hawaiian cotton) (Gossypium sandvicense)
Gene	ES332_A13G087300v1
PFAM codes	PF01490
InterPro codes	IPR013057
PDB structures (whole Protein)	-

A0A5D2MIN1F1

AF4

Model Sequence

ESM1

Model Sequence