A0A5J5SZU9 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Aa_trans domain-containing protein
Main knot	4₁ (81%)
Global pLDDT	77.31
Species	Sea-island cotton
UniProt	A0A5J5SZU9
Structure Prediction Model	AlphaFold v4: A0A5J5SZU9
PDB structures	-
Model length	395
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					80.4	47-247	201	1-46, 248-395	46	148

Model Sequence

MWVYECHKMDFTKAGKLESQNEVQQPQQPTKGTSFFRTCFNGLNALSGVGILSIPYALAQGGWLSLLLLFLVAVLCWYTGLLLRRCMDTHPLIKTYPDIVEFLILEGDNLDKLFPNTAFKVAGLKIRGKQAFVMLTSLIVLPTTWLKSLALLAYVSAGGVLASFILVICIFWVGAVDKVGFHENDSVLNWKGMPIAISMFAFCYCGHAVFPTLCSSMKDRIKFSKVLLVCFITSTINYGSMAVMGYLMFGEHLKSQVTLNLPIKKMSTKIAIYTTLINPLTKYAIITAPITTAIEETSLFRNSRSLSILIRTALVISTVIVALTIPFFGYVMAFIGSFLSVTASMLLPCLCYLKLNKAARKMGLELIIIVAILVAGLFIGVVGTFTSIKQIVNHL

Comments

ESM1

Categories voted by users:

Information

Protein name	Aa_trans domain-containing protein
Main knot	4₁ (64%)
Global pLDDT	85.81
Species	Sea-island cotton
UniProt	A0A5J5SZU9
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	395
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					74.0	51-321	271	1-50, 322-395	50	74

Model Sequence

Comments

Domain	Eukaryota
Family	Malvaceae
Species (Full Name)	Gossypium barbadense (Sea-island cotton) (Egyptian cotton)
Gene	ES319_A13G081000v1
PFAM codes	PF01490
InterPro codes	IPR013057
PDB structures (whole Protein)	-

A0A5J5SZU9F1

AF4

Model Sequence

ESM1

Model Sequence