A0A5J6Z820 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	23S rRNA (Guanosine-2'-O-)-methyltransferase RlmB (EC 2.1.1.185)
Main knot	3₁ (92%)
Global pLDDT	84.04
Species	Corynebacterium urogenitale
UniProt	A0A5J6Z820
Structure Prediction Model	AlphaFold v4: A0A5J6Z820
PDB structures	-
Model length	323
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					91.9	251-292	42	1-250, 293-323	250	31

Model Sequence

MAGNSQRRGAVRKTNKKGAQVGSGGQRRRGLTGKKATPKAEDRTYHAAYKRKKQQQRRASGAHDNRAAARKRHGLDDQVELVVGRNPVIECLHARVPATALFVSEGAKGDDRLAEAVHTCADRGISVMEVSKQELDRMTGNGMHQGIGLQIPPYQYREVEDIIERVGQSGKPGMIVALDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVAKATNMVRALKQFQQAGYQVIGLDAGGDHTLDTYDGTTPVVIVVGSEGKGLSRLVGETCDTILSIPMAGKVESLNASVAAGVVLSEFARQRRVN

Comments

ESM1

Categories voted by users:

Information

Protein name	23S rRNA (Guanosine-2'-O-)-methyltransferase RlmB (EC 2.1.1.185)
Main knot	3₁ (91%)
Global pLDDT	92.45
Species	Corynebacterium urogenitale
UniProt	A0A5J6Z820
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	323
ESM generation time	2023-06-24: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					80.5	251-292	42	1-250, 293-323	250	31

Model Sequence

Comments

Domain	Bacteria
Family	Corynebacteriaceae
Species (Full Name)	Corynebacterium urogenitale
Gene	rlmB1 CUROG_01915
PFAM codes	PF00588, PF08032
InterPro codes	IPR001537, IPR004441, IPR013123, IPR029026, IPR029028, IPR029064
PDB structures (whole Protein)	-

A0A5J6Z820F1

AF4

Model Sequence

ESM1

Model Sequence