| Protein name |
Recombinase domain-containing protein
|
| Main knot |
31#31 (76%)
|
| Global pLDDT |
74.92
|
| Species |
Phocaeicola dorei
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A5M5ZQR8
|
| PDB structures |
-
|
| Model length |
319
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
81.0 | 35-265 | 231 | 1-34, 266-319 | 34 | 54 |
|
Model Sequence |
MRNLIRLNKEINLSIMPKGWKGGKENQISCLTLYMTKEEREKIMLKFSLYRNKAYRVEIMCYLLSNYIAHICGKPCESIAMKVWKYGKEYNTPNKYVYYSIGAIPVDLKNAVALNMSKSGYRFRNEIYYHAVTAFYNAPDRLLDRMCKRIAYMKNPKAKYDRAVRLQTVIPEEIYQMINSYAIQNGMNVCDLIRITLRASCVSKKERALDDSMIGKVFSLYRLIKQPAYPFTANPNNRALLVEIKGEREMYYLMKLMKRRRISNAEMLRKAIRALDDVISHKDKIKRNVTIEPQSYDENEEDYWYDKIAKNDFARSIYL
|
| Protein name |
Recombinase domain-containing protein
|
| Main knot |
31#31 (74%)
|
| Global pLDDT |
57.15
|
| Species |
Phocaeicola dorei
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
319
|
| ESM generation time |
2023-06-25: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
41.5 | 34-269 | 236 | 1-33, 270-319 | 33 | 50 |
|
Model Sequence |
MRNLIRLNKEINLSIMPKGWKGGKENQISCLTLYMTKEEREKIMLKFSLYRNKAYRVEIMCYLLSNYIAHICGKPCESIAMKVWKYGKEYNTPNKYVYYSIGAIPVDLKNAVALNMSKSGYRFRNEIYYHAVTAFYNAPDRLLDRMCKRIAYMKNPKAKYDRAVRLQTVIPEEIYQMINSYAIQNGMNVCDLIRITLRASCVSKKERALDDSMIGKVFSLYRLIKQPAYPFTANPNNRALLVEIKGEREMYYLMKLMKRRRISNAEMLRKAIRALDDVISHKDKIKRNVTIEPQSYDENEEDYWYDKIAKNDFARSIYL
|
| Domain |
Bacteria
|
| Family |
Bacteroidaceae
|
| Species (Full Name) |
Phocaeicola dorei
|
| Gene |
F2Y61_17295
|
| PDB structures (whole Protein) |
-
|
A0A5M5ZQR8