| Protein name |
Transposase
|
| Main knot |
81 (62%)
|
| Global pLDDT |
90.7
|
| Species |
Paenibacillus amylolyticus
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A5M9WZ29
|
| PDB structures |
-
|
| Model length |
279
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
91.8 | 26-260 | 235 | 1-25, 261-279 | 25 | 19 |
|
Model Sequence |
MSIEKILYFVQSSNYEQMHSSSAKVQLLRQAISEYQSSLGLQRLEWTEQNVVGKFIATKEYDLKNQQLFDLFDNHGVLSKVVRIKLNKLNESEKLLLQEFCIASNPYLRFSPTRANSGQREQELFAYKKKITNNNIHWCLGQWKHYKRINSSFVEHWESIRNLACKEMLRTNQHKVTLPVGKLSVVISDSNIDADAAYKMGGAELLQRSGKINMEQVRLYAARGYFSLSQVYKHLQVENIQTKYLLLTLKSERNMMEGRIQQNNRYSWINIQSEAEWKQ
|
| Protein name |
Transposase
|
| Main knot |
81 (70%)
|
| Global pLDDT |
88.51
|
| Species |
Paenibacillus amylolyticus
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
279
|
| ESM generation time |
2023-06-23: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
92.5 | 28-244 | 217 | 1-27, 245-279 | 27 | 35 |
|
Model Sequence |
MSIEKILYFVQSSNYEQMHSSSAKVQLLRQAISEYQSSLGLQRLEWTEQNVVGKFIATKEYDLKNQQLFDLFDNHGVLSKVVRIKLNKLNESEKLLLQEFCIASNPYLRFSPTRANSGQREQELFAYKKKITNNNIHWCLGQWKHYKRINSSFVEHWESIRNLACKEMLRTNQHKVTLPVGKLSVVISDSNIDADAAYKMGGAELLQRSGKINMEQVRLYAARGYFSLSQVYKHLQVENIQTKYLLLTLKSERNMMEGRIQQNNRYSWINIQSEAEWKQ
|
| Domain |
Bacteria
|
| Family |
Paenibacillaceae
|
| Species (Full Name) |
Paenibacillus amylolyticus
|
| Gene |
EC604_23255
|
| PDB structures (whole Protein) |
-
|
A0A5M9WZ29