A0A5N5MWH1 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (72%)
Global pLDDT	87.81
Species	Striped catfish
UniProt	A0A5N5MWH1
Structure Prediction Model	AlphaFold v4: A0A5N5MWH1
PDB structures	-
Model length	329
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.1	9-221	213	1-8, 222-329	8	108

Model Sequence

MAGSAGEWCLMESDPGVFTELIKGFGCKGAQVEEIWSMEPENFQNLKPVHGLIFLFKWQPGEEPAGSIVQDSRLDQIFFAKQVINNACATQAIVSVLLNCSHPDMHLGETLTEFREFSQSFDAAMKGLALSNSEVIRQVHNSFARQQMFEFDAKSSAKDEDAFHFVSYVPVSGRLYELDGLREGPIDLGPCNQEDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYERKIAELQAHLTEEEPMDTDQSANLLSSIQSEIAKYQLLIEEENQKLKKYKIENIRRKHNYLPFIMELLKTLAEYQQLMPLVEKAKEKQSAKKIQEAK

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (79%)
Global pLDDT	88.24
Species	Striped catfish
UniProt	A0A5N5MWH1
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	329
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					87.4	10-221	212	1-9, 222-329	9	108

Model Sequence

Comments

Domain	Eukaryota
Family	Pangasiidae
Species (Full Name)	Pangasianodon hypophthalmus (Striped catfish) (Helicophagus hypophthalmus)
Gene	PHYPO_G00029140
PFAM codes	PF01088, PF18031
InterPro codes	IPR001578, IPR017390, IPR033837, IPR036959, IPR038765, IPR041507
PDB structures (whole Protein)	-

A0A5N5MWH1F1

AF4

Model Sequence

ESM1

Model Sequence