| Protein name |
S-adenosylmethionine synthase (EC 2.5.1.6)
|
| Main knot |
31 (63%)
|
| Global pLDDT |
97.16
|
| Species |
Striped catfish
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A5N5PRQ4
|
| PDB structures |
-
|
| Model length |
390
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
98.4 | 19-285 | 267 | 1-18, 286-390 | 18 | 105 |
|
Model Sequence |
MDIVNNFTDDGSFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPDAKVACETVCKTGMVLLCGEITSKASVDYQKIVRDTIKHIGYDNSDKGFDYKTCNVLVALEQQSPDIAQGVHVDRHEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKMAELRRDGTIPWLRPDSKTQVTVHYKQENGAMIPVRVHTVVISVQHDDFISLEEQKRILKEKVIKAVVPAKYLDDNTIYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAKLCKRVLVQVSYAIGVTHPLSISLFTFGSSEKTEKELLHIVNKNFDLRPGVIVRDLKLKRPIYQKTACYGHFGRPEFTWEVAKTLAF
|
| Protein name |
S-adenosylmethionine synthase (EC 2.5.1.6)
|
| Main knot |
31 (67%)
|
| Global pLDDT |
81.54
|
| Species |
Striped catfish
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
390
|
| ESM generation time |
2023-06-24: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
74.6 | 21-281 | 261 | 1-20, 282-390 | 20 | 109 |
|
Model Sequence |
MDIVNNFTDDGSFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPDAKVACETVCKTGMVLLCGEITSKASVDYQKIVRDTIKHIGYDNSDKGFDYKTCNVLVALEQQSPDIAQGVHVDRHEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKMAELRRDGTIPWLRPDSKTQVTVHYKQENGAMIPVRVHTVVISVQHDDFISLEEQKRILKEKVIKAVVPAKYLDDNTIYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAKLCKRVLVQVSYAIGVTHPLSISLFTFGSSEKTEKELLHIVNKNFDLRPGVIVRDLKLKRPIYQKTACYGHFGRPEFTWEVAKTLAF
|
| Domain |
Eukaryota
|
| Family |
Pangasiidae
|
| Species (Full Name) |
Pangasianodon hypophthalmus (Striped catfish) (Helicophagus hypophthalmus)
|
| Gene |
PHYPO_G00180050
|
| PFAM codes |
PF00438, PF02772, PF02773
|
| InterPro codes |
 IPR002133, IPR022628, IPR022629, IPR022630, IPR022631, IPR022636
|
| PDB structures (whole Protein) |
-
|
A0A5N5PRQ4