A0A5U7P8R0 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Amino acid permease
Main knot	4₁ (55%)
Global pLDDT	81.24
Species	Salmonella choleraesuis
UniProt	A0A5U7P8R0
Structure Prediction Model	AlphaFold v4: A0A5U7P8R0
PDB structures	-
Model length	262
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					84.6	27-255	229	1-26, 256-262	26	7

Model Sequence

MMDSQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGGFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWASAAAFFVIINAINLTNVKVFGEMEFWFAIIKVIAVIAMILFGAWLLFSDTAGPQATVRNLWEQGGFLPHGWTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLLPW

Comments

ESM1

Categories voted by users:

Information

Protein name	Amino acid permease
Main knot	4₁ (48%)
Global pLDDT	90.94
Species	Salmonella choleraesuis
UniProt	A0A5U7P8R0
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	262
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					86.2	26-255	230	1-25, 256-262	25	7

Model Sequence

Comments

Domain	Bacteria
Family	Enterobacteriaceae
Species (Full Name)	Salmonella enterica (Salmonella choleraesuis)
Gene	B4Q96_19030 CGY64_17745
PFAM codes	PF00324
InterPro codes	IPR004840, IPR004841
PDB structures (whole Protein)	-

A0A5U7P8R0F1

AF4

Model Sequence

ESM1

Model Sequence