A0A641RVM5 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Sodium/solute symporter
Main knot	4₁ (50%)
Global pLDDT	88.42
Species	Bacteroides ovatus
UniProt	A0A641RVM5
Structure Prediction Model	AlphaFold v4: A0A641RVM5
PDB structures	-
Model length	328
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					90.7	51-296	246	1-50, 297-328	50	32

Model Sequence

MEALDWLVIGVFFLALIGIIVWVVRQKQNDSADYFLGGRDATWLAIGASIFASNIGSEHLIGLAGAGASSGMAMAHWEIQGWMILILGWVFVPFYTRSMVYTMPEFLERRYNPQSRTILSVISLVSYVLTKVAVTVYAGGLVFQQVFGIKELWGIDFFWIAAIGLVVLTALYTIFGGMKSVLYTSVLQTPILLLGSLIILVLGFKELGGWDEMMRVCGAVTVNDYGDTMTNLIRSNDDANFPWLGALIGSAIIGFWYWCTDQFIVQRVLSGKNEMEARRGTIFGAYLKLLPVFLFLIPGMIAFALHQKYIGAGGEGFLPTLANGTANA

Comments

ESM1

Categories voted by users:

Information

Protein name	Sodium/solute symporter
Main knot	4₁ (55%)
Global pLDDT	87.82
Species	Bacteroides ovatus
UniProt	A0A641RVM5
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	328
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					91.7	51-296	246	1-50, 297-328	50	32

Model Sequence

Comments

Domain	Bacteria
Family	Bacteroidaceae
Species (Full Name)	Bacteroides ovatus
Gene	F3D60_28405
PFAM codes	PF00474
InterPro codes	IPR001734, IPR038377
PDB structures (whole Protein)	-

A0A641RVM5F1

AF4

Model Sequence

ESM1

Model Sequence