A0A661NL32 | AlphaKnot 2.0

Categories voted by users:

Information

Protein name	DUF3888 domain-containing protein
Main knot	5₁ (92%)
Global pLDDT	87.94
Species	Deltaproteobacteria bacterium
UniProt	A0A661NL32
Structure Prediction Model	AlphaFold v6: A0A661NL32
PDB structures	-
Structure in AlphaLasso	A0A661NL32: LS_2++C
Model length	106
AlphaFold deposition date	2026-06-01
AlphaKnot deposition date	2026-07-09

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.85	40-95	56	1-39, 96-106	39	11		Knot
					97.83	51-84	34	1-50, 85-106	50	22		Knot

MKKLALLLVLAASLAGGSALAGKVGKDCTYKGKKLWGKVKFVDSFPDLKVQIVSAFPDLKVKMVNAFPDKCGKWKVVDSFPDIKIKIVTSFPDIKIKYVDAFPGVP

Comments

Categories voted by users:

Information

Protein name	DUF3888 domain-containing protein
Main knot	5₁ (91%)
Global pLDDT	89.29
Species	Deltaproteobacteria bacterium
UniProt	A0A661NL32
Structure Prediction Model	AlphaFold v4: A0A661NL32
PDB structures	-
Structure in AlphaLasso	A0A661NL32: LS_2++C
Model length	106
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.9	39-96	58	1-38, 97-106	38	10

MKKLALLLVLAASLAGGSALAGKVGKDCTYKGKKLWGKVKFVDSFPDLKVQIVSAFPDLKVKMVNAFPDKCGKWKVVDSFPDIKIKIVTSFPDIKIKYVDAFPGVP

Comments

Categories voted by users:

Information

Protein name	DUF3888 domain-containing protein
Main knot	0₁ (93%)
Species	Deltaproteobacteria bacterium
UniProt	A0A661NL32
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	A0A661NL32: LS_2++C
Model length	106
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

MKKLALLLVLAASLAGGSALAGKVGKDCTYKGKKLWGKVKFVDSFPDLKVQIVSAFPDLKVKMVNAFPDKCGKWKVVDSFPDIKIKIVTSFPDIKIKYVDAFPGVP

Comments

Domain	Bacteria
Family	unclassified Deltaproteobacteria
Species (Full Name)	Deltaproteobacteria bacterium
Gene	DRI34_12035
PDB structures (whole Protein)	-

A0A661NL32F1