A0A672QDQ4 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (84%)
Global pLDDT	81.1
Species	Dianchi golden-line fish
UniProt	A0A672QDQ4
Structure Prediction Model	AlphaFold v4: A0A672QDQ4
PDB structures	-
Model length	344
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					84.7	9-221	213	1-8, 222-344	8	123

Model Sequence

TVLGSVYWCLTGDTVLEFMFLLLSSGCKGAQVEEIWSMEPENFENLKPVHGLIFLFKWQPGEEPAGSIVQDSRLDEIFFAKQVINNACATQAIVSVLLNCTHPDMHLGETLSEFKEFSQSFDAAMKGLALSNSEVIRQVHNSFARQQMFEFDAKSSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVQPVIEKRIQKYSKGEIRFNLMAIVSDRKMIYEKKIVELQVQLTEEEPMDTDQSGNHLGSIQSEIAKYQLLIEEENQKLKRYKIENIRRKHNYLPFIMELLKTLAEYQQLIPLVEKVSPVTPVCLIADHITSLEGSAVTLSPLCC

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (69%)
Global pLDDT	79.4
Species	Dianchi golden-line fish
UniProt	A0A672QDQ4
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	344
ESM generation time	2023-06-24: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					57.7	9-221	213	1-8, 222-344	8	123

Model Sequence

Comments

Domain	Eukaryota
Family	Cyprinidae
Species (Full Name)	Sinocyclocheilus grahami (Dianchi golden-line fish) (Barbus grahami)
Gene	LOC107560683
PFAM codes	PF01088, PF18031
InterPro codes	IPR001578, IPR017390, IPR033837, IPR036959, IPR038765, IPR041507
PDB structures (whole Protein)	-

A0A672QDQ4F1

AF4

Model Sequence

ESM1

Model Sequence