A0A672YU25 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (89%)
Global pLDDT	82.73
Species	orbiculate cardinalfish
UniProt	A0A672YU25
Structure Prediction Model	AlphaFold v4: A0A672YU25
PDB structures	-
Model length	367
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					88.8	9-221	213	1-8, 222-367	8	146

Model Sequence

MSGSAGEWCLMESDPGVFTELIKGFGCKGAQVEEIWSMEPENFDNLKPVHGLIFLFKWQPGEEPAGSIVQDSRLDSIFFAKQVINNACATQAIVSVLLNCSHSDMLLGETLTEFREFSQSFDAAMKGLALSNSEVIRQVHNSFARQQMFEFDAKSSAKDEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYERKIAELQTQLTEDEPMDTDQSSTFLSSIQSEIAKYQLLIEEENQKLKRYKIENIRRKHNYLPFIMELLKTLAEYQQLMPLVEKSRKKLLGHQKSSKTMAMQSSINSCMYHVTKTHKKENMECLKALFLSRQCHRY

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (68%)
Global pLDDT	82.16
Species	orbiculate cardinalfish
UniProt	A0A672YU25
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	367
ESM generation time	2023-06-26: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					87.0	10-221	212	1-9, 222-367	9	146

Model Sequence

Comments

Domain	Eukaryota
Family	Apogonidae
Species (Full Name)	Sphaeramia orbicularis (orbiculate cardinalfish)
Gene	uchl5
PFAM codes	PF01088, PF18031
InterPro codes	IPR001578, IPR017390, IPR033837, IPR036959, IPR038765, IPR041507
PDB structures (whole Protein)	-

A0A672YU25F1

AF4

Model Sequence

ESM1

Model Sequence