A0A6A5ZS41 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (73%)
Global pLDDT	88.11
Species	Lophiotrema nucula
UniProt	A0A6A5ZS41
Structure Prediction Model	AlphaFold v4: A0A6A5ZS41
PDB structures	-
Model length	398
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					86.0	10-250	241	1-9, 251-398	9	148

Model Sequence

LDKQTWQGFCEIESDPAFFSSMIREMGAGAVTVKEVFALDPELLAMLPQPIHGLILLFRARQVAQADQESSCPANVWFANQMPAQNSCATLAMINILLNIKDIDIGPHLQQFKDFTKPLQPYQRGQTLSSWDFVKRIHNGYAKKMDMLEDDKYLQYKVQNEKKHKARRPSQDSIATDDSGAEKFEENAHHFIAVMPIDGDVWKLDGMDAYPTNLGAIDDANGRDWLSIASATINEVMMMGGDAEYNIVALVQAPLAALRKELCVNIAQYQRTVKRLEDLDKDWSSFLVDGDGATAPPPSPSMLDAIGVSQSMVNSTVIEDFIQKNIDSEDLQELLDRRIRYISEQNDLRNSITAAMDDEAEEDQKAAERRWDYGPVIKKWLEMLAENGYLEQHLDEFL

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Main knot	5₂ (72%)
Global pLDDT	88.61
Species	Lophiotrema nucula
UniProt	A0A6A5ZS41
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	398
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					89.0	11-248	238	1-10, 249-398	10	150

Model Sequence

Comments

Domain	Eukaryota
Family	Lophiotremataceae
Species (Full Name)	Lophiotrema nucula
Gene	BDV96DRAFT_462290
PFAM codes	PF01088
InterPro codes	IPR001578, IPR036959, IPR038765
PDB structures (whole Protein)	-

A0A6A5ZS41F1

AF4

Model Sequence

ESM1

Model Sequence