A0A6H1TSR8 | AlphaKnot 2.0

AF4

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Information

Protein name	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (EC 2.1.1.200) (tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase) (tRNA Cm32/Um32 methyltransferase)
Main knot	3₁ (88%)
Global pLDDT	81.97
Species	Oxynema aestuarii
UniProt	A0A6H1TSR8
Structure Prediction Model	AlphaFold v4: A0A6H1TSR8
PDB structures	-
Model length	290
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					87.4	80-130	51	1-79, 131-290	79	160

Model Sequence

MGLENIRIVLVQPAGPLNVGSIARIMKNMGLSQLILVDPQCDRLDPEAVKMSVHAVDILENARQVPSLRDALAGCHKAIATTGRSRSLPTNLEHPRLALPWLLDTPSALIFGPEDRGLNNAELKYAQRFVQIPSSDAYSSLNLAQAVGVCAYELYQSECGIERSPAPTTQIEAPPDSVPVPIDQLEEYYRHLEALLLDIGYLYPHTAERRMEKFRRLYNRARLDRNEVAMLRGILRQVEWAIAQNRRVGGTLKTSQDSPEGSSSLDEPSSHRNRVCEASPQENRGARDPE

Comments

ESM1

Categories voted by users:

Information

Protein name	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (EC 2.1.1.200) (tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase) (tRNA Cm32/Um32 methyltransferase)
Main knot	3₁ (86%)
Global pLDDT	88.32
Species	Oxynema aestuarii
UniProt	A0A6H1TSR8
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	290
ESM generation time	2023-06-24: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					98.1	80-130	51	1-79, 131-290	79	160

Model Sequence

Comments

Domain	Bacteria
Family	Microcoleaceae
Species (Full Name)	Oxynema aestuarii AP17
Gene	trmJ HCG48_02800
PFAM codes	PF00588
InterPro codes	IPR001537, IPR004384, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A6H1TSR8F1

AF4

Model Sequence

ESM1

Model Sequence