| Protein name |
Phytochrome
|
| Main knot |
41 (84%)
|
| Global pLDDT |
74.86
|
| Species |
Pumpkin
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A6J1HW87
|
| PDB structures |
-
|
| Model length |
1119
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
81.3 | 81-381 | 301 | 1-80, 382-1119 | 80 | 738 |
|
Model Sequence |
MSSMTTNKTVCSKTSGDRSKHGAHVVAQTSIDAKLQVDFEGSERLFDYSASVDVNIASSSSNVHATTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADYKEVNLLNPILVHCKTSGKPFYAILHRVDMGLIIDLEPVNPADVPVTAAGALKSYKLAAKAIPKLQSLPSGNISLLCEVLAKEVSDLTGYDRVMVYKFHDDEHGEVVAECCQSDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINESDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDTPVGIVTQSPNIMDLVKCDGAALYFRKKFWLVGVTPSEAQIRNIAEWLLEDHSGSAGLSTDSLVEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRNMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEEVEEECKVITNVPLVDEKTQQLDELRVITNEMVHLIETAAVPILAVDVFGKINGWNSKATELTGLAIQQAIGMPLVDCLVNDSIKVVKKMLSLAVQGIEEKSIEIKLKTFGIPGHDGPVILEVNSCCSRDLNNNVLGVYIIGQDVTKKKLIMNQYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRRVEMTNRMLLGEVFTLESFGCRVKDQTLTKLRILLHRVISGQDTEKFLFKFCDREGNYVETLLTASKRTDSEGKITGVVFFLHVASSELKYALEMQRMSEQATADNLHKLAYLRQEIRKPLDGITFMQNLLGSSDLNEEQKRLLKSNTLSREQLYKIVYDTDIQSIEECYIETNCREFNLGDVLDVVMNQTMILSRERQVKIICESPADVSSLHLYGDNMRLQQVLSEFLTNTLLFTCKESSVVFRTTPRKERIGKGIHILHLEFRIIHPVPGIPAHLIQEMFDDNNDSSKEGLGLYISQKLVKIMNGTVQYIREAVTSSFIILIEFPLAEHIA
|
| Domain |
Eukaryota
|
| Family |
Cucurbitaceae
|
| Species (Full Name) |
Cucurbita maxima (Pumpkin) (Winter squash)
|
| Gene |
LOC111468101
|
| PFAM codes |
PF00360, PF00989, PF01590, PF02518, PF08446
|
| InterPro codes |
 IPR000014, IPR001294, IPR003018, IPR003594, IPR005467, IPR012129, IPR013515, IPR013516, IPR013654, IPR013767, IPR016132, IPR029016, IPR035965, IPR036890, IPR043150
|
| PDB structures (whole Protein) |
-
|
A0A6J1HW87