A0A6L6EED8 | AlphaKnot 2.0

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Information

Protein name	tRNA (Guanosine(37)-N1)-methyltransferase TrmD
Main knot	3₁ (52%)
Global pLDDT	97.6
Species	Actinomycetia bacterium
UniProt	A0A6L6EED8
Structure Prediction Model	AlphaFold v4: A0A6L6EED8
PDB structures	-
Model length	137
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					98.2	83-136	54	1-82, 137-137	82	1

MLKINIISIFPEYLKPLELSLLGKAQEKGLISIGIHDLRKHTTDPHHSVDDTPYGGGAGMVMSAQPWGLAIDEISDNASQYDLIILTPAGKKFDQQMAQEFSTKENLIFACGRYEGIDARVGKYYAGQKNFKVHEVS

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Categories voted by users:

Information

Protein name	tRNA (Guanosine(37)-N1)-methyltransferase TrmD
Main knot	3₁ (56%)
Global pLDDT	85.49
Species	Actinomycetia bacterium
UniProt	A0A6L6EED8
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	137
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					85.2	83-136	54	1-82, 137-137	82	1

MLKINIISIFPEYLKPLELSLLGKAQEKGLISIGIHDLRKHTTDPHHSVDDTPYGGGAGMVMSAQPWGLAIDEISDNASQYDLIILTPAGKKFDQQMAQEFSTKENLIFACGRYEGIDARVGKYYAGQKNFKVHEVS

Comments

Domain	Bacteria
Family	unclassified Actinomycetia
Species (Full Name)	Actinomycetia bacterium
Gene	F2565_03575
PFAM codes	PF01746
InterPro codes	IPR002649, IPR016009, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A6L6EED8F1