A0A6V8HQM4 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Ubiquitinyl hydrolase 1 (EC 3.4.19.12)
Main knot	5₂ (85%)
Global pLDDT	83.01
Species	Penicillium pinophilum
UniProt	A0A6V8HQM4
Structure Prediction Model	AlphaFold v4: A0A6V8HQM4
PDB structures	-
Model length	399
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					86.0	32-249	218	1-31, 250-399	31	150

Model Sequence

MRDRAKRRRLNSDDTSPPPETIIDKSSWNGFCEIESEPASFNVMLREFGVEGVRVQELFSLDDKPVYGFIFLFRWHEDNPEKQEASCPEGLWFANQTADNACASVALLNIVNNIDDITLGDTLASFKDFTMPFTPALRGDAIANFEFIKRIHNSFARSMDILNSDLSLKGEVLASKSKRQNDNGTSNEAAFHFIAFVPTLGRLWKFDGLERQPQDLAPCTDDDWLDQVRSHLIEKMTAYEEDQIEFSVLSLVRDPLKDYTEQLARNVRSLQNIRQRLNGSQLEDIKAVLGTDGFDGVLLDTDPALGLTEESLMAVETPESGNGIHENDLPQEYVRLANSQQGIKTSIQVEMQSRRDEEASVEVRRHDCSSAVEFWARALASKGVVQDILRSIEEKDKKQ

Comments

ESM1

Categories voted by users:

Information

Protein name	Ubiquitinyl hydrolase 1 (EC 3.4.19.12)
Main knot	5₂ (88%)
Global pLDDT	87.01
Species	Penicillium pinophilum
UniProt	A0A6V8HQM4
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	399
ESM generation time	2023-06-26: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					72.5	32-249	218	1-31, 250-399	31	150

Model Sequence

Comments

Domain	Eukaryota
Family	Trichocomaceae
Species (Full Name)	Talaromyces pinophilus (Penicillium pinophilum)
Gene	TCE0_060r18511
PFAM codes	PF01088
InterPro codes	IPR001578, IPR036959, IPR038765
PDB structures (whole Protein)	-

A0A6V8HQM4F1

AF4

Model Sequence

ESM1

Model Sequence