A0A7C1AZF0 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (EC 2.1.1.200) (tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase) (tRNA Cm32/Um32 methyltransferase)
Main knot	3₁ (98%)
Global pLDDT	85.66
Species	Lentisphaerae bacterium
UniProt	A0A7C1AZF0
Structure Prediction Model	AlphaFold v4: A0A7C1AZF0
PDB structures	-
Model length	298
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					91.0	94-147	54	1-93, 148-298	93	151

Model Sequence

MTVMVSSSERPGLSDALRNVRIVLVRPIYGGNIGAVARAMKNMGIRDLALVNPRPDVDWNEARQRAYRALDILESQRRFASLAAAVADCGLVAGTTARPGLYREHARTPREWAPRLLEAALDMPVALVFGPEDSGLTNEEIAVCTQIIQIPSSEDYPSLNLSHAVMVCCYELFVASGTFFPREERSPEAPSHLRERMFAMWRSALLAIGFMDEQKADHMMMGLRRILSRGPLTVADVKILMGIARQAQWCGATVRSRGIDPHLHAAERCGPGIQGEDDADRQGQEGAGAELRDGRGSG

Comments

ESM1

Categories voted by users:

Information

Protein name	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (EC 2.1.1.200) (tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase) (tRNA Cm32/Um32 methyltransferase)
Main knot	3₁ (95%)
Global pLDDT	87.05
Species	Lentisphaerae bacterium
UniProt	A0A7C1AZF0
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	298
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					90.1	94-148	55	1-93, 149-298	93	150

Model Sequence

Comments

Domain	Bacteria
Family	unclassified Lentisphaerae
Species (Full Name)	Lentisphaerae bacterium
Gene	trmJ ENG36_03400
PFAM codes	PF00588
InterPro codes	IPR001537, IPR004384, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A7C1AZF0F1

AF4

Model Sequence

ESM1

Model Sequence