A0A7C1T1W3 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	RNA-binding protein
Main knot	3₁ (80%)
Global pLDDT	84.04
Species	Thermofilum pendens
UniProt	A0A7C1T1W3
Structure Prediction Model	AlphaFold v4: A0A7C1T1W3
PDB structures	-
Model length	337
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					95.5	251-308	58	1-250, 309-337	250	29

Model Sequence

MELALQHLQGERHGREAENLHLHGEEEGAHKGARESPVQRQELDPLAAAFYTSFSREFATTVYTSSWPPPRPRTRRAIAIPSSALSPLKEPARTLHAAFLARALAIFRVEEVLIYKERGVPCTYLEKILTALEVPQYLRRYLVPLERTYRYLGLAPPLAAPSHQLKHENLPLREGIVVKASRGVAEVYAGLDENIIVEGNFSAGDRVTLRREGSRWVAADRDTLDVYWGYRVRSYGSLKEALERSKGRYLVVFTSRRGEPLQSVADRLKRDAEAAGGLLLVYGTWDKGVQEIAEEEGLDLSAFSPYLVNVAVNQGTRTIRTEEAVLISLSLVNYLLP

Comments

ESM1

Categories voted by users:

Information

Protein name	RNA-binding protein
Main knot	3₁ (69%)
Global pLDDT	87.7
Species	Thermofilum pendens
UniProt	A0A7C1T1W3
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	337
ESM generation time	2023-06-25: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					71.2	251-308	58	1-250, 309-337	250	29

Model Sequence

Comments

Domain	Archaea
Family	Thermofilaceae
Species (Full Name)	Thermofilum pendens
Gene	ENM88_07910 ENP77_03785
PFAM codes	PF02598
InterPro codes	IPR003750, IPR012340, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A7C1T1W3F1

AF4

Model Sequence

ESM1

Model Sequence