A0A7C2PBH9 | AlphaKnot 2.0

Categories voted by users:

Information

Protein name	tRNA (Guanosine(37)-N1)-methyltransferase TrmD
Main knot	3₁ (49%)
Global pLDDT	97.52
Species	Caldimicrobium sp
UniProt	A0A7C2PBH9
Structure Prediction Model	AlphaFold v4: A0A7C2PBH9
PDB structures	-
Model length	131
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					97.9	85-130	46	1-84, 131-131	84	1

MKFYILTIFPEYFSSPLKVGLLGKAIERGLIEVEVLNLRDFAHDKHRTVDDEPFGGGEGMVFKPEPLYQAIQKVKEKDPETHVVYLSPQGKLFNQKVAESLAKHKSILFICGRYEGIDERIRAHFVDEEVS

Comments

Categories voted by users:

Information

Protein name	tRNA (Guanosine(37)-N1)-methyltransferase TrmD
Main knot	3₁ (53%)
Global pLDDT	83.36
Species	Caldimicrobium sp
UniProt	A0A7C2PBH9
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	131
ESM generation time	2023-06-24: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					82.5	85-130	46	1-84, 131-131	84	1

MKFYILTIFPEYFSSPLKVGLLGKAIERGLIEVEVLNLRDFAHDKHRTVDDEPFGGGEGMVFKPEPLYQAIQKVKEKDPETHVVYLSPQGKLFNQKVAESLAKHKSILFICGRYEGIDERIRAHFVDEEVS

Comments

Domain	Bacteria
Family	Thermodesulfobacteriaceae
Species (Full Name)	Caldimicrobium sp
Gene	ENN93_05120
PFAM codes	PF01746
InterPro codes	IPR002649, IPR016009, IPR029026, IPR029028
PDB structures (whole Protein)	-

A0A7C2PBH9F1