A0A7D5R1I0F1

Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
AF4
Categories voted by users:
Information
Protein name
Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
Main knot
31 (79%)
Global pLDDT
96.59
Species
Nitrosopumilus oxyclinae
UniProt
Structure Prediction Model
AlphaFold v4:  A0A7D5R1I0
PDB structures
-
Model length
222
AlphaFold deposition date
2022-06-01
AlphaKnot deposition date
2023-01-27
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
96.7 151-197 47 1-150, 198-222 150 25
Model Sequence
MFSFVLAESSLELVPSELKHHPSVVSHARKLDKHPSEILLDNSWHFAAMKGIQNEMKRGRPDLVHFSILEATTIPLYLQNKMKFYVHTLDDKVISFGNNVHIPKSYHRFAGVIEKLYQEKEITTKDDVLLEIEEKTFPQLLDEINPSKVLGFSTTGKTSTYEKIAKDIPDDACIVIGGFQKGHFSDLIENKITDLYSVGDESFEGHVVVARMLYEYEKTIFM
Comments
ESM1
Categories voted by users:
Information
Protein name
Ribosomal RNA small subunit methyltransferase Nep1 (EC 2.1.1.-) (16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)
Main knot
31 (78%)
Global pLDDT
94.49
Species
Nitrosopumilus oxyclinae
UniProt
Structure Prediction Model
PDB structures
-
Model length
222
ESM generation time
AlphaKnot deposition date
2023-06-28
Help
Knot types & Model sequence
Knot pLDDT Knot core range Knot core length Knot tails range N-end length C-end length Main Knot
97.4 151-197 47 1-150, 198-222 150 25
Model Sequence
MFSFVLAESSLELVPSELKHHPSVVSHARKLDKHPSEILLDNSWHFAAMKGIQNEMKRGRPDLVHFSILEATTIPLYLQNKMKFYVHTLDDKVISFGNNVHIPKSYHRFAGVIEKLYQEKEITTKDDVLLEIEEKTFPQLLDEINPSKVLGFSTTGKTSTYEKIAKDIPDDACIVIGGFQKGHFSDLIENKITDLYSVGDESFEGHVVVARMLYEYEKTIFM
Comments
Domain Archaea
Family Nitrosopumilaceae
Species (Full Name) Nitrosopumilus oxyclinae
Gene nep1 C5F49_08410
PFAM codes  PF03587
InterPro codes  IPR005304,  IPR023503,  IPR029026,  IPR029028
PDB structures (whole Protein) -
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