| Protein name |
Integrase catalytic domain-containing protein
|
| Main knot |
31 (60%)
|
| Global pLDDT |
86.49
|
| Species |
Iodobacter fluviatilis
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A7G3G6K4
|
| PDB structures |
-
|
| Model length |
245
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
87.5 | 2-117 | 116 | 1-1, 118-245 | 1 | 128 |
|
Model Sequence |
MLVFHYSTAAGAELKAPEKKAAQSEAALDIPQDAWHWQLHAVRIKRKLVFVVMEQQSRFVMVFWELKKGDVVGLVQQFLERLLFLLGMQCRETGALDEASMQLALQRVVEKCQQIHFTKGTDRSVQAHINEVIMVCRREVGSCGCLPDGIAEAAWFDNNQNGFLRTVRGGAYFYPKEALFRSWLHSYSTQSEDDISAAIARHQQLRLEELAMRLNPVLTQSLPDDVNANAAVQAMMAKLMNRAGN
|
| Protein name |
Integrase catalytic domain-containing protein
|
| Main knot |
31 (55%)
|
| Global pLDDT |
83.51
|
| Species |
Iodobacter fluviatilis
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
245
|
| ESM generation time |
2023-06-25: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
91.1 | 2-118 | 117 | 1-1, 119-245 | 1 | 127 |
|
Model Sequence |
MLVFHYSTAAGAELKAPEKKAAQSEAALDIPQDAWHWQLHAVRIKRKLVFVVMEQQSRFVMVFWELKKGDVVGLVQQFLERLLFLLGMQCRETGALDEASMQLALQRVVEKCQQIHFTKGTDRSVQAHINEVIMVCRREVGSCGCLPDGIAEAAWFDNNQNGFLRTVRGGAYFYPKEALFRSWLHSYSTQSEDDISAAIARHQQLRLEELAMRLNPVLTQSLPDDVNANAAVQAMMAKLMNRAGN
|
| Domain |
Bacteria
|
| Family |
Chromobacteriaceae
|
| Species (Full Name) |
Iodobacter fluviatilis
|
| Gene |
C1H71_04555
|
| PDB structures (whole Protein) |
-
|
A0A7G3G6K4