| Protein name |
E3 ubiquitin-protein ligase
|
| Main knot |
31#31 (85%)
|
| Global pLDDT |
81.33
|
| Species |
Bacteroides vulgatus
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A7J5MPJ4
|
| PDB structures |
-
|
| Model length |
299
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
86.7 | 38-256 | 219 | 1-37, 257-299 | 37 | 43 |
|
Model Sequence |
MRKEYYNYVVKLPVLLHELFRGKVADHHFTDLTVVMNHLVKSCILVAEGRKVSPSTRRILSNMERIPDMSFFFRRQEKAVLFFEMDPSFAGSLQRAIVFGGWGNRQRLAVRLVCAFCSSAAVTLDNLSMELAAGEVFRRPEGYLIHTYVSNYQYVFLKETALSQRMSVEGMLTAAAELLVGTDGGEYHIPDNLGRIAESVLAVRGSTLKDFRRQRLVSIRTNTIGPDRISSFMERHGITSAREFLRRVVLFFLEARYLIYRGEVEPGEDDFQDEEESDWEDTMFEECSKRDFVTSIYSY
|
| Protein name |
E3 ubiquitin-protein ligase
|
| Main knot |
31#31 (67%)
|
| Global pLDDT |
71.54
|
| Species |
Bacteroides vulgatus
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
299
|
| ESM generation time |
2023-06-23: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
81.8 | 11-249 | 239 | 1-10, 250-299 | 10 | 50 |
|
Model Sequence |
MRKEYYNYVVKLPVLLHELFRGKVADHHFTDLTVVMNHLVKSCILVAEGRKVSPSTRRILSNMERIPDMSFFFRRQEKAVLFFEMDPSFAGSLQRAIVFGGWGNRQRLAVRLVCAFCSSAAVTLDNLSMELAAGEVFRRPEGYLIHTYVSNYQYVFLKETALSQRMSVEGMLTAAAELLVGTDGGEYHIPDNLGRIAESVLAVRGSTLKDFRRQRLVSIRTNTIGPDRISSFMERHGITSAREFLRRVVLFFLEARYLIYRGEVEPGEDDFQDEEESDWEDTMFEECSKRDFVTSIYSY
|
| Domain |
Bacteria
|
| Family |
Bacteroidaceae
|
| Species (Full Name) |
Phocaeicola vulgatus (Bacteroides vulgatus)
|
| Gene |
F9001_14450
|
| PDB structures (whole Protein) |
-
|
A0A7J5MPJ4