A0A7L1RX78 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	S-adenosylmethionine synthase (EC 2.5.1.6)
Main knot	3₁ (73%)
Global pLDDT	96.68
Species	Middendorff's grasshopper-warbler
UniProt	A0A7L1RX78
Structure Prediction Model	AlphaFold v4: A0A7L1RX78
PDB structures	-
Model length	396
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					98.5	27-284	258	1-26, 285-396	26	112

Model Sequence

MNGPVDGLCDYTLDDEGAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSRAIVDYQRVVRDAIRHIGYDDSAKGFDYKTCNVLVALEQQSPDIAQGVHLHRNEEDVGAGDQGLMFGYATDETEECMPLTIILAHKLNARLAELRRSGELPWLRPDSKTQVTVQYIQKNGAVVPVRVHTIVISVQHDETISLENMRRTLKERVIQVVVPAKYLDSKTVYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAHPLSISLFTYGTSQKTEKELLDIVHKNFDLRPGVIVRDLDLKKPIYQKTACYGHFGRQEFSWEVPKKLVF

Comments

ESM1

Categories voted by users:

Information

Protein name	S-adenosylmethionine synthase (EC 2.5.1.6)
Main knot	3₁ (78%)
Global pLDDT	82.44
Species	Middendorff's grasshopper-warbler
UniProt	A0A7L1RX78
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Model length	396
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					69.6	27-287	261	1-26, 288-396	26	109

Model Sequence

Comments

Domain	Eukaryota
Family	Locustellidae
Species (Full Name)	Locustella ochotensis (Middendorff's grasshopper-warbler)
Gene	Mat1a LOCOCH_R11427
PFAM codes	PF00438, PF02772, PF02773
InterPro codes	IPR002133, IPR022628, IPR022629, IPR022630, IPR022631, IPR022636
PDB structures (whole Protein)	-

A0A7L1RX78F1

AF4

Model Sequence

ESM1

Model Sequence