| Protein name |
Phytochrome
|
| Main knot |
41 (80%)
|
| Global pLDDT |
75.23
|
| Species |
Valley oak
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 A0A7N2MAQ7
|
| PDB structures |
-
|
| Model length |
1123
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
82.5 | 82-382 | 301 | 1-81, 383-1123 | 81 | 741 |
|
Model Sequence |
MSSKSVSNKTNCSRSSSALSKHGARVVAQTPIDAKLHVDFEETKRFFDYSTSIDFNLSSSTSNVPSSSVSAYLQKMQRGSLIQPFGCIIAVDDENFSVLAYSENAPEMLDLAPHAVPSIEQQEALTFGTDVRTLFRSSGATALQKAANFGEVNLLNPILVHCKTSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCDVLVKEVSDLTGYDRVMVYKFHEDEHGEVVAESCRPDLEPYLGLHYPATDIPQASRFLFMRNKVRMICDCLAPPVKVIQDKRLSQPLSLCGSTLRSPHGCHAQYMANMGSIASFVMSVTINEDDNEVESDQQKGRKLWGLVVCHHTSPRFIPFPLRYACEFLIQVFGVQINKEVELAAQLREKHILRTQTVLCDMLLRDAPVGIVTQSPNVMDLVKCDGAALYYRKKIWLLGVTPTEGQIRDIAEWLLEYHNGSTGLSTDSLMEAGYPAASVLGDEVCGMAAVRITSKDFLFWFRSHTAKEIKWGGAKHDPGDKDDGRKMHPRSSFKAFLEVVKRRSRPWEDVEMDAIHSLQLILRGSLQDEIMDESKMIVNVPSVDDRIQRVDELRVVTSEMVRLIETAAVPILAVDGSGSVNGWNTKSAELTGLSVEQAIGMSLIDLVSDDSVEVVKNLLNSASQGIEEQNIEIKLKTFGPQENNGPVILVVNACCSRDTKENVVGVCFIGQDVTGQKVIWDKYTRIQGDYVGIMRSPSALIPPIFMTDEHGRCLEWNDAMQKLSGLRREEATERMLLGEVFTVKNFGCRVKDHDTLTKLRILLNGVIAGHDADKLLFGFYDRLGNYVEALLSANKRTDAEGRITGALFFLHVASPELQYAMQVQRISEKAEADSIKKLSYFRQEISKPLNGIMFMQNLMGSSNLSKEQKELIKISSLCQEQLAKVVDDTDIERIEECYMEMSSGEFNLGEVLEVVINQVMILSQERQVQVIRDSPAEVSSMNLYGDNLRLQQVLSDFLTNALHFTPAFEGSSVAFRVIPRKERIGMKMHIVHLEFRITHPAPGIPEDLIQEMFHHNHGVSREGLGLYICQKLAKIMNGTVQYLREAERSSFIILIEFPLVCPIDQ
|
| Domain |
Eukaryota
|
| Family |
Fagaceae
|
| Species (Full Name) |
Quercus lobata (Valley oak)
|
| PFAM codes |
PF00360, PF00989, PF01590, PF02518, PF08446
|
| InterPro codes |
 IPR000014, IPR001294, IPR003018, IPR003594, IPR005467, IPR012129, IPR013515, IPR013516, IPR013654, IPR013767, IPR016132, IPR029016, IPR035965, IPR036890, IPR043150, IPR044767
|
| PDB structures (whole Protein) |
-
|
A0A7N2MAQ7