| Protein name |
2-haloacid dehalogenase
|
| Main knot |
61 (76%)
|
| Global pLDDT |
93.33
|
| Species |
Verrucomicrobia bacterium
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v6:
A0A7W1VT74
|
| PDB structures |
-
|
| Model length |
299
|
| AlphaFold deposition date |
2026-06-01
|
| AlphaKnot deposition date |
2026-07-09
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
96.13 | 61-274 | 214 | 1-60, 275-299 | 60 | 25 |
|
Knot |
Model Sequence |
MIGKPNEIKEFEARDEIERVFHEIRQVLRVSGVNLNFRTWASFEKFLPAMWDDFRPNAETHNFERAADEIRQQAVESADALPKLNALDGLELGGSRSWQIQQALDLYHYINPKLLVLTAAVRGALEGEEMGGSNEGTDVIEAGVPATMYAMEMVDEKPKEKEVRKLFADIKKTMALSSVNSDYRTLALWPDYLSAAWKQLKPITRSDAFQEAAKELQQQGRTLAKQLPYRLSLTRAKIEALGEDVEKIMHTTQLFEQLLPPLILNIALLQLDWSSAAELRQSPFPGRSSVKQEVQHAMA
|
| Protein name |
2-haloacid dehalogenase
|
| Main knot |
61 (79%)
|
| Global pLDDT |
93.58
|
| Species |
Verrucomicrobia bacterium
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
A0A7W1VT74
|
| PDB structures |
-
|
| Model length |
299
|
| AlphaFold deposition date |
2022-06-01
|
| AlphaKnot deposition date |
2023-01-27
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
96.2 | 26-263 | 238 | 1-25, 264-299 | 25 | 36 |
|
Model Sequence |
MIGKPNEIKEFEARDEIERVFHEIRQVLRVSGVNLNFRTWASFEKFLPAMWDDFRPNAETHNFERAADEIRQQAVESADALPKLNALDGLELGGSRSWQIQQALDLYHYINPKLLVLTAAVRGALEGEEMGGSNEGTDVIEAGVPATMYAMEMVDEKPKEKEVRKLFADIKKTMALSSVNSDYRTLALWPDYLSAAWKQLKPITRSDAFQEAAKELQQQGRTLAKQLPYRLSLTRAKIEALGEDVEKIMHTTQLFEQLLPPLILNIALLQLDWSSAAELRQSPFPGRSSVKQEVQHAMA
|
| Protein name |
2-haloacid dehalogenase
|
| Main knot |
61 (72%)
|
| Global pLDDT |
89.92
|
| Species |
Verrucomicrobia bacterium
|
| UniProt | |
| Structure Prediction Model |
ESM v1: esmfold_v1 - nov. 2022
|
| PDB structures |
-
|
| Model length |
299
|
| ESM generation time |
2023-06-23: download the generated 3D model
|
| AlphaKnot deposition date |
2023-06-28
|
| Knot pLDDT | Knot core range | Knot core length | Knot tails range | N-end length | C-end length | Main Knot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
93.3 | 54-263 | 210 | 1-53, 264-299 | 53 | 36 |
|
Model Sequence |
MIGKPNEIKEFEARDEIERVFHEIRQVLRVSGVNLNFRTWASFEKFLPAMWDDFRPNAETHNFERAADEIRQQAVESADALPKLNALDGLELGGSRSWQIQQALDLYHYINPKLLVLTAAVRGALEGEEMGGSNEGTDVIEAGVPATMYAMEMVDEKPKEKEVRKLFADIKKTMALSSVNSDYRTLALWPDYLSAAWKQLKPITRSDAFQEAAKELQQQGRTLAKQLPYRLSLTRAKIEALGEDVEKIMHTTQLFEQLLPPLILNIALLQLDWSSAAELRQSPFPGRSSVKQEVQHAMA
|