A0A7W6DB75 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Penicillin-insensitive murein endopeptidase (EC 3.4.24.-)
Main knot	3₁ (79%)
Global pLDDT	85.36
Species	Rhizobium azooxidifex
UniProt	A0A7W6DB75
Structure Prediction Model	AlphaFold v4: A0A7W6DB75
PDB structures	-
Structure in AlphaLasso	A0A7W6DB75: L₀ L_-1C
Model length	351
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					88.6	42-342	301	1-41, 343-351	41	9

Model Sequence

MSFKLMTLLSRLGATAALLAAVAAPLHAEERPAKELFGARALPAAMQTQAYGSYAKGCIAGAVAIPTDGPAWQAMRLSRNRRWGHPAMIALLEQFSQDARKLDWPGLLLGDISQPRGGPMLSGHASHQMGLDADIWFTPMPDRRLSAQEREQLPFTSMLDKSKFLTVDSRRWTSTHARLVMKAASYPQVERVFVNPAIKKKLCETWQGDRSLLGKVRPIYGHDEHFHIRIKCPPGSANCKGQAAVPAGDGCDKSLAWWFTKEPWAKPKPKKDQKPVKPRYVKLSDLPKSCAAVLAGPAPASEQEVTYGGGAAMAFAAQPAAEDGIAAVIAADGGAEPAGIIPVPLPRPSLQ

Comments

ESM1

Categories voted by users:

Information

Protein name	Penicillin-insensitive murein endopeptidase (EC 3.4.24.-)
Main knot	3₁ (82%)
Global pLDDT	77.44
Species	Rhizobium azooxidifex
UniProt	A0A7W6DB75
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	A0A7W6DB75: L₀ L_-1C
Model length	351
ESM generation time	2023-06-26: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					70.2	42-334	293	1-41, 335-351	41	17

Model Sequence

Comments

Domain	Bacteria
Family	Rhizobiaceae
Species (Full Name)	Rhizobium azooxidifex
Gene	GGQ64_001732
PFAM codes	PF03411
InterPro codes	IPR005073, IPR009045
PDB structures (whole Protein)	-

A0A7W6DB75F1

AF4

Model Sequence

ESM1

Model Sequence