A0A7Y2K635 | AlphaKnot 2.0

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Information

Protein name	YbbR-like domain-containing protein
Main knot	5₁ (90%)
Global pLDDT	87.18
Species	Ignavibacteriaceae bacterium
UniProt	A0A7Y2K635
Structure Prediction Model	AlphaFold v6: A0A7Y2K635
PDB structures	-
Structure in AlphaLasso	A0A7Y2K635: LS_2++C
Model length	113
AlphaFold deposition date	2026-06-01
AlphaKnot deposition date	2026-07-09

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					98.05	48-102	55	1-47, 103-113	47	11		Knot
					98.09	58-91	34	1-57, 92-113	57	22		Knot

MKLFINSLFVISLLILLCTRITIAQSEDEINEDDCTFNSFQLYGKIQFVESFPDITIKVVESFPDLEVKIVESFPDDCGEWQIVDSFPDLKVKIVESFPDIEIKFVESFPGLP

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Categories voted by users:

Information

Protein name	YbbR-like domain-containing protein
Main knot	5₁ (90%)
Global pLDDT	87.36
Species	Ignavibacteriaceae bacterium
UniProt	A0A7Y2K635
Structure Prediction Model	AlphaFold v4: A0A7Y2K635
PDB structures	-
Structure in AlphaLasso	A0A7Y2K635: LS_2++C
Model length	113
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					98.1	46-104	59	1-45, 105-113	45	9

MKLFINSLFVISLLILLCTRITIAQSEDEINEDDCTFNSFQLYGKIQFVESFPDITIKVVESFPDLEVKIVESFPDDCGEWQIVDSFPDLKVKIVESFPDIEIKFVESFPGLP

Comments

Categories voted by users:

Information

Protein name	YbbR-like domain-containing protein
Main knot	0₁ (95%)
Species	Ignavibacteriaceae bacterium
UniProt	A0A7Y2K635
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	A0A7Y2K635: LS_2++C
Model length	113
ESM generation time	2023-06-22: download the generated 3D model
AlphaKnot deposition date	2023-06-28

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MKLFINSLFVISLLILLCTRITIAQSEDEINEDDCTFNSFQLYGKIQFVESFPDITIKVVESFPDLEVKIVESFPDDCGEWQIVDSFPDLKVKIVESFPDIEIKFVESFPGLP

Comments

Domain	Bacteria
Family	Ignavibacteriaceae
Species (Full Name)	Ignavibacteriaceae bacterium
Gene	HKM87_07225
PDB structures (whole Protein)	-

A0A7Y2K635F1