A0A7Y2PLY1 | AlphaKnot 2.0

AF4

Categories voted by users:

Information

Protein name	Plasmid pRiA4b ORF-3 family protein
Main knot	3₁ (43%)
Global pLDDT	91.43
Species	Caldanaerobacter subterraneus
UniProt	A0A7Y2PLY1
Structure Prediction Model	AlphaFold v4: A0A7Y2PLY1
PDB structures	-
Structure in AlphaLasso	A0A7Y2PLY1: L_+1N
Model length	387
AlphaFold deposition date	2022-06-01
AlphaKnot deposition date	2023-01-27

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Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					91.8	3-106	104	1-2, 107-387	2	281

Model Sequence

MLIQCTKKLLDVIERKPVAYEEKDLLFSWHANLITLNRRKTVVLVNDKNRYVVVLYGLKAKDFERFDEIILNAIRLTLLDECIDEEIVEEYLRQSGEIVYGKTKNSSYVGKLNTACNIVPYYGELLLDNTIYKTFVSKIASRYLVRKQEGEGYISPGKEMFKDLEIFAKRPVFKCKAVELKVTLQMENHNIWRRLIVPLNTTFTQFHKILQAAFYWLDYHLHEFFIYGDEIWDISLINFINHPSYNKAGYKPVVNLVSYDEDFDYLREDGIERKLEKGIRLSEYIPKYKRLQYVYDFGDNWRHYIEVERVIEDYDKNYAICVDGEGNAPPEDVGGEYGYDKFLEIISDKNNPEYESTLVWGEYQGYKDFNISEVNKNIKFVYDSFLL

Comments

ESM1

Categories voted by users:

Information

Protein name	Plasmid pRiA4b ORF-3 family protein
Main knot	3₁ (48%)
Global pLDDT	86.7
Species	Caldanaerobacter subterraneus
UniProt	A0A7Y2PLY1
Structure Prediction Model	ESM v1: esmfold_v1 - nov. 2022
PDB structures	-
Structure in AlphaLasso	A0A7Y2PLY1: L_+1N
Model length	387
ESM generation time	2023-06-23: download the generated 3D model
AlphaKnot deposition date	2023-06-28

Help

Knot types & Model sequence

					Knot pLDDT	Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Main Knot
					93.9	2-101	100	1-1, 102-387	1	286

Model Sequence

Comments

Domain	Bacteria
Family	Thermoanaerobacteraceae
Species (Full Name)	Caldanaerobacter subterraneus
Gene	HKI81_11455
PFAM codes	PF07929
InterPro codes	IPR012912, IPR024047
PDB structures (whole Protein)	-

A0A7Y2PLY1F1

AF4

Model Sequence

ESM1

Model Sequence